Developed by: Dr. Richard Simon & BRB-ArrayTools Development Team
BRB-ArrayTools is an integrated package for the visualization and statistical analysis of Microarray gene expression, copy number, methylation and RNA-Seq data. It was developed by professional statisticians experienced in the analysis of microarray data and involved in the development of improved methods for the design and analysis of microarray based experiments. The analytic and visualization tools are integrated into Excel as an add-in. The analytic and visualization tools themselves are developed in the powerful R statistical system, in C and Fortran programs and in Java applications. Visual Basic for Applications is the glue that integrates the components and hides the complexity of the analytic methods from the user. The system incorporates a variety of powerful analytic and visualization tools developed specifically for microarray data analysis.
BRB-ArrayTools is free for non-commercial use.
What data types does our software handle?
RNA Sequencing data
Illumina methylation data
Copy number data
What analysis tools do we provide?
Class comparison for differential expression
Class prediction with complete cross-validation using a wide variety of prediction methods
Graphical 2-D and 3-D interactive plots
Gene Set Enrichment Analysis with many gene sets
Extensive Biological Annotations
SOURCE database annotation
Bioconductor annotation packages for Affymetrix and Illumina data
Significant genes linked to:
Gene Ontology, CGAP, and more.
BRB-SeqTools v1.0 is released
(Oct 19, 2016).
BRB-ArrayTools v4.6.0 Beta 1 is coming soon.